Documents

This page contains documents relevant to the MPEG-G standard and the ecosystem of applications built around it.

MPEG-G documents

TypeTitleDescription
MPEG-G white paperAn overview of the MPEG-G standard and its main features
3rd MPEG Workshop on Genomic Information RepresentationSlides presented at the Workshop on Genomic Information Representation held in San Diego on 18th April 2018
2nd MPEG Workshop on Genomic Information Representation, "From Standards to Deployment"Slides presented at the Workshop on Genomic Information Representation held in Torino on 19th July 2017
1st MPEG Workshop on Genomic Information RepresentationSlides presented at the Workshop on Genomic Information Representation held in San Diego on 23rd February 2016
MPEG Seminar on Prospects on Genome Compression StandardizationSlides presented at the Seminar on Prospects on Genome Compression Standardization held in Geneva on 20th October 2015

Publications

TitleAuthorsReferenceDescription
CALQ: compression of quality values of aligned sequencing dataJan Voges, Jörn Ostermann, Mikel HernaezBioinformatics, Oxford University Press, Vol. 34, No. 10, pp. 1650-1658, May 2018, edited by Bonnie BergerA paper on the quality score compression technology that can be used for aligned data in MPEG-G
Comparison of high-throughput sequencing data compression toolsIbrahim Numanagic, James K Bonfield, Faraz Hach, Jan Voges, Jörn Ostermann, Claudio Alberti, Marco Mattavelli, S Cenk SahinalpNature Methods, Nature Publishing Group, Vol. 13, No. 12, pp. 1005-1008, October 2016An overview paper about the performance of a comprehensive set of sequencing data compression tools of which most can be used in an MPEG-G compliant encoder
MPEG-G: The Emerging Standard for Genomic DataJan Voges, Jörn OstermannPoster abstracts of the 25th German Conference on Bioinformatics (PeerJ Preprints), PeerJ, Vol. 5, p. 2, Tübingen (DE), September 2017A poster summarizing the MPEG-G features and performance as of mid 2017
CALQ: compression of quality values of aligned sequencing data
Jan Voges, Jörn Ostermann, Mikel Hernaez
F1000Research (Presented at: Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017), International Society for Computational Biology (ISCB), Vol. 6, p. 1382 (poster), Prague (CZ), August 2017A poster on the quality score compression technology that can be used for aligned data in MPEG-G
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality ValuesClaudio Alberti, Noah Daniels, Mikel Hernaez, Jan Voges, Rachel L Goldfeder, Ana A Hernandez-Lopez, Marco Mattavelli, Bonnie Berger2016 Data Compression Conference (DCC), IEEE Computer Society Conference Publishing Services (CPS), pp. 221-230, Snowbird, UT (US), April 2016A paper on the framework that was used to assess the impact of quantizing quality scores
Predictive Coding of Aligned Next-Generation Sequencing DataJan Voges, Marco Munderloh, Jörn Ostermann2016 Data Compression Conference (DCC), IEEE Computer Society Conference Publishing Services (CPS), pp. 241-250, Snowbird, UT (US), April 2016A paper on a reference-free read compression algorithm that can be used in an MPEG-G compliant encoder

Other documents

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